PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1087s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 223aa    MW: 24689.5 Da    PI: 6.7873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1087s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.5e-174090155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            + y+GVr +  +g+Wv+eIr p++   + r++lg+f tae+Aa+a++ a++ ++g
  SapurV1A.1087s0080.1.p 40 PSYRGVRMRQ-WGKWVSEIRQPKK---KSRIWLGSFSTAEMAARAHDVAALTIKG 90
                            57*****998.**********854...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-3340100No hitNo description
PfamPF008475.5E-114090IPR001471AP2/ERF domain
SMARTSM003809.9E-3841104IPR001471AP2/ERF domain
PROSITE profilePS5103223.3274198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-314199IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-214199IPR016177DNA-binding domain
PRINTSPR003672.7E-104253IPR001471AP2/ERF domain
PRINTSPR003672.7E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKNSTKQESR NSCKRNQAPP ESSCGSDKQA ESSGNSGRHP SYRGVRMRQW GKWVSEIRQP  60
KKKSRIWLGS FSTAEMAARA HDVAALTIKG RSALLNFPEL AHEFPRPASS SPRDIQAAAA  120
LAATLSCKTS QKGRETGDGA ELMLLPRSLD STPASTETPE YSLSSPLRDD DTFIDLPDIL  180
QDISHQFDEF CYLSPWKPIG TETSDDGFWH HEEPSLWEIP LK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-163798363ATERF1
3gcc_A8e-163798363ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559260.0EF155926.1 Populus trichocarpa TINY-like protein (TINYL7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303364.11e-121hypothetical protein POPTR_0003s07700g
SwissprotQ8LBQ73e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9ZQP34e-47ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA9PL761e-120A9PL76_POPTR; TINY-like protein
STRINGPOPTR_0003s07700.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.14e-48ERF family protein